The configuration file that you have just
created on the authoring station will serve as
the new XSLT style sheet for your DocBook document. So basically everything
you have to do is to instruct your XSLT processor to convert your
DocBook document using this new style sheet. Here are some examples how to do
this:
Example 1.3. Converting a document with Saxon
java -jar saxon.jar /usr/local/etc/annotate.conf
example.xml
The output of the XSLT processor is one or several HTML files, depending on whether you chose to produce chunked output or not. These HTML files now have to be moved to the web server. Annotate's CGI part expects them in the directory you configured as its document root there. If your web server is the same machine as your authoring station, you only have to move the result files to the appropriate directory, for example:
mv *.html /usr/local/share/annotate